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1.
MonaGO: a novel gene ontology enrichment analysis visualisation system.
BMC Bioinformatics
; 23(1): 69, 2022 Feb 14.
Article
in English
| MEDLINE | ID: mdl-35164667
2.
PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact.
Brief Bioinform
; 21(3): 1069-1079, 2020 05 21.
Article
in English
| MEDLINE | ID: mdl-31161204
3.
iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.
Brief Bioinform
; 21(3): 1047-1057, 2020 05 21.
Article
in English
| MEDLINE | ID: mdl-31067315
4.
Resourcing, annotating, and analysing synthetic peptides of SARS-CoV-2 for immunopeptidomics and other immunological studies.
Proteomics
; 21(17-18): e2100036, 2021 09.
Article
in English
| MEDLINE | ID: mdl-33811468
5.
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.
Brief Bioinform
; 20(6): 2150-2166, 2019 11 27.
Article
in English
| MEDLINE | ID: mdl-30184176
6.
DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites.
Bioinformatics
; 36(4): 1057-1065, 2020 02 15.
Article
in English
| MEDLINE | ID: mdl-31566664
7.
Predicting Proteolysis in Complex Proteomes Using Deep Learning.
Int J Mol Sci
; 22(6)2021 Mar 17.
Article
in English
| MEDLINE | ID: mdl-33803033
8.
Medically actionable pathogenic variants in a population of 13,131 healthy elderly individuals.
Genet Med
; 22(11): 1883-1886, 2020 11.
Article
in English
| MEDLINE | ID: mdl-32606442
9.
Development of a cloud-based Bioinformatics Training Platform.
Brief Bioinform
; 18(3): 537-544, 2017 05 01.
Article
in English
| MEDLINE | ID: mdl-27084333
10.
Towards an open, collaborative, reusable framework for sharing hands-on bioinformatics training workshops.
Brief Bioinform
; 18(2): 348-355, 2017 03 01.
Article
in English
| MEDLINE | ID: mdl-26984618
11.
TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.
BMC Genomics
; 19(1): 238, 2018 Apr 05.
Article
in English
| MEDLINE | ID: mdl-29621972
12.
POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles.
Bioinformatics
; 33(17): 2756-2758, 2017 Sep 01.
Article
in English
| MEDLINE | ID: mdl-28903538
13.
Next-generation sequencing: a challenge to meet the increasing demand for training workshops in Australia.
Brief Bioinform
; 14(5): 563-74, 2013 Sep.
Article
in English
| MEDLINE | ID: mdl-23543352
14.
Immunolyser: A web-based computational pipeline for analysing and mining immunopeptidomic data.
Comput Struct Biotechnol J
; 21: 1678-1687, 2023.
Article
in English
| MEDLINE | ID: mdl-36890882
15.
TCR_Explore: A novel webtool for T cell receptor repertoire analysis.
Comput Struct Biotechnol J
; 21: 1272-1282, 2023.
Article
in English
| MEDLINE | ID: mdl-36814721
16.
BigFiRSt: A Software Program Using Big Data Technique for Mining Simple Sequence Repeats From Large-Scale Sequencing Data.
Front Big Data
; 4: 727216, 2021.
Article
in English
| MEDLINE | ID: mdl-35118375
17.
ggVolcanoR: A Shiny app for customizable visualization of differential expression datasets.
Comput Struct Biotechnol J
; 19: 5735-5740, 2021.
Article
in English
| MEDLINE | ID: mdl-34745458
18.
HIVed, a knowledgebase for differentially expressed human genes and proteins during HIV infection, replication and latency.
Sci Rep
; 7: 45509, 2017 03 30.
Article
in English
| MEDLINE | ID: mdl-28358052
19.
SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems.
Sci Rep
; 7: 41031, 2017 01 23.
Article
in English
| MEDLINE | ID: mdl-28112271
20.
GlycoMinestruct: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features.
Sci Rep
; 6: 34595, 2016 10 06.
Article
in English
| MEDLINE | ID: mdl-27708373
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